mechanoChemML
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mechanoChemML
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PyPI project page
List of examples
Active learning
Multi-resolution learning
NN-based PDE solver
System identification
Non-Local Calculus
API reference
mechanoChemML.src
mechanoChemML.workflows
mechanoChemML
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__call__() (mechanoChemML.src.load_dump.funcclass method)
__getitem__() (mechanoChemML.workflows.pde_solver.pde_utility.BatchData method)
(mechanoChemML.workflows.pde_solver.pde_utility.BatchDataHeter method)
(mechanoChemML.workflows.pde_solver.pde_utility.BatchDataTime method)
__len__() (mechanoChemML.workflows.pde_solver.pde_utility.BatchData method)
(mechanoChemML.workflows.pde_solver.pde_utility.BatchDataHeter method)
(mechanoChemML.workflows.pde_solver.pde_utility.BatchDataTime method)
_build_loss() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_build_model() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_build_one_layer() (in module mechanoChemML.src.nn_models)
_build_optimizer() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_bulk_residual() (mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state.WeakPDESteadyStateDiffusion method)
(mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear.WeakPDELinearElasticity method)
(mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear.WeakPDENonLinearElasticity method)
(mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_check_weights() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_clone() (in module mechanoChemML.src.dictionary)
_compute_residual() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_copier() (in module mechanoChemML.src.dictionary)
_debugger() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_directories() (in module mechanoChemML.src.load_dump)
_find() (in module mechanoChemML.src.dictionary)
_flatten() (in module mechanoChemML.src.load_dump)
_form_NN_dict_from_str() (in module mechanoChemML.src.nn_models)
_form_parameter_value() (in module mechanoChemML.src.nn_models)
_formatstring() (in module mechanoChemML.src.dictionary)
_get() (in module mechanoChemML.src.dictionary)
_has() (in module mechanoChemML.src.dictionary)
_is_digit() (in module mechanoChemML.src.nn_models)
_is_list() (in module mechanoChemML.src.nn_models)
_is_tuple() (in module mechanoChemML.src.nn_models)
_load_data() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_load_saved_cnn_model() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_load_saved_states() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_loss_deterministic() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_loss_probabilistic() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_output_bc_stats() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_output_bc_stats_good_bad() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_parse_sys_args() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_permute() (in module mechanoChemML.src.dictionary)
_pop() (in module mechanoChemML.src.dictionary)
_read_config_file() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_replace() (in module mechanoChemML.src.dictionary)
_set() (in module mechanoChemML.src.dictionary)
_setup() (in module mechanoChemML.src.load_dump)
_train() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
_update() (in module mechanoChemML.src.dictionary)
A
Active_learning (class in mechanoChemML.workflows.active_learning.active_learning)
add_2edge_bc() (in module mechanoChemML.workflows.pde_solver.geometry)
add_input_layer() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
add_one_layer() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
add_output_layer() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
any_left_fold() (mechanoChemML.src.kfold_train.MLKFold method)
apply_bcs() (in module mechanoChemML.workflows.pde_solver.geometry)
apply_bcs_one_edge() (in module mechanoChemML.workflows.pde_solver.geometry)
assign_region_mask() (in module mechanoChemML.workflows.pde_solver.geometry)
B
BatchData (class in mechanoChemML.workflows.pde_solver.pde_utility)
BatchDataHeter (class in mechanoChemML.workflows.pde_solver.pde_utility)
BatchDataTime (class in mechanoChemML.workflows.pde_solver.pde_utility)
biases (in module mechanoChemML.workflows.active_learning.save_weights)
BNN_user_general (class in mechanoChemML.src.nn_models)
BNN_user_weak_pde_general (class in mechanoChemML.src.nn_models)
BNN_user_weak_pde_general_dynamic (class in mechanoChemML.src.nn_models)
BNN_user_weak_pde_general_heter (class in mechanoChemML.src.nn_models)
build_callbacks() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
build_learningrate() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
build_loss() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
build_model() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
build_optimizer() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
C
call() (mechanoChemML.src.idnn.IDNN method)
(mechanoChemML.src.nn_models.BNN_user_general method)
(mechanoChemML.src.nn_models.BNN_user_weak_pde_general method)
(mechanoChemML.src.nn_models.BNN_user_weak_pde_general_dynamic method)
(mechanoChemML.src.nn_models.BNN_user_weak_pde_general_heter method)
(mechanoChemML.src.nn_models.NN_user_general method)
(mechanoChemML.src.pde_layers.LayerFillRandomNumber method)
(mechanoChemML.src.pde_layers.LayerFillRandomToBCs method)
(mechanoChemML.src.pde_layers.LayerFillZeros method)
(mechanoChemML.src.transform_layer.Transform method)
(mechanoChemML.workflows.mr_learning.mrnn_models.CNN_user_supervise method)
(mechanoChemML.workflows.mr_learning.mrnn_models.user_DNN_kregl1l2_gauss_grad method)
(mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state.LayerDiffusionSteadyStateBulkResidual method)
(mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear.LayerLinearElasticityBulkResidual method)
(mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear.LayerNonLinearElasticityBulkResidual method)
callback_PrintDot (class in mechanoChemML.workflows.mr_learning.mrnn_models)
check_and_install() (in module mechanoChemML.workflows.pde_solver.geometry)
check_layer() (mechanoChemML.workflows.mr_learning.mrnn_models.CNN_user_supervise method)
check_point_callback() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
checkPending() (in module mechanoChemML.workflows.active_learning.slurm_manager)
clip() (in module mechanoChemML.workflows.pde_solver.geometry)
CNN_supervise() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
CNN_user_supervise (class in mechanoChemML.workflows.mr_learning.mrnn_models)
CNN_user_supervise_setup() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
compileCASMOutput() (in module mechanoChemML.workflows.active_learning.data_generation_wrapper)
compute_bc_value() (in module mechanoChemML.workflows.pde_solver.geometry)
compute_output_shape() (mechanoChemML.src.transform_layer.Transform method)
compute_total_parameters_per_CNN() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
compute_total_parameters_per_DNN() (mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
ComputeBoundaryMaskNodalData() (in module mechanoChemML.src.pde_layers)
ComputeGraduAtGPs() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
ComputeIntTranBxP() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
ComputeIntTranNxU() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
ComputeNeumannBoundaryResidualNodalData() (in module mechanoChemML.src.pde_layers)
ComputeNeumannBoundaryResidualNodalDataNew() (in module mechanoChemML.src.pde_layers)
ComputeValuAtGPs() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
config (in module mechanoChemML.src.hparameters_cnn_grid)
(in module mechanoChemML.src.hparameters_dnn_grid)
confirmation_of_consistency() (mechanoChemML.workflows.systemID.systemID.systemID method)
ConstitutiveRelation() (mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state.LayerDiffusionSteadyStateBulkResidual method)
(mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear.LayerLinearElasticityBulkResidual method)
(mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear.LayerNonLinearElasticityBulkResidual method)
convex() (in module mechanoChemML.src.idnn)
convexMult() (in module mechanoChemML.src.idnn)
create_polygon() (in module mechanoChemML.workflows.pde_solver.geometry)
create_test_set() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
csv_logger (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
csvDf() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
D
dataset_pop_list() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
debug_problem() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
debugger() (mechanoChemML.workflows.systemID.systemID.systemID method)
DELIMITER (in module mechanoChemML.src.texify)
deserialize() (in module mechanoChemML.src.load_dump)
distance() (in module mechanoChemML.workflows.pde_solver.geometry)
DNN() (in module mechanoChemML.src.kbnn)
DNN_kregl1l2_gauss() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
do_the_sampling() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
dof (in module mechanoChemML.src.pde_layers)
dump() (in module mechanoChemML.src.load_dump)
E
E_nu_to_lambda_mu() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
earlyStopping (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
Edge_List (in module mechanoChemML.workflows.pde_solver.geometry)
eta (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
eta_train (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
eta_train0 (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
example_NN (in module mechanoChemML.src.nn_models)
exe_cmd() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(in module mechanoChemML.workflows.pde_solver.pde_utility)
expand_dataset() (in module mechanoChemML.workflows.pde_solver.pde_utility)
ExpandDatasetHeter() (in module mechanoChemML.workflows.pde_solver.pde_utility)
F
find_wells() (in module mechanoChemML.src.idnn)
findstring() (in module mechanoChemML.src.texify)
fit() (in module mechanoChemML.src.LeastR)
fit_lasso() (in module mechanoChemML.src.LeastR)
fit_polynomial_form() (in module mechanoChemML.workflows.pde_solver.geometry)
fit_ridge() (in module mechanoChemML.src.LeastR)
fit_ridge_cv() (in module mechanoChemML.src.LeastR)
force_install() (in module mechanoChemML.workflows.pde_solver.geometry)
fout (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
from_config() (mechanoChemML.src.transform_layer.Transform class method)
funcclass (class in mechanoChemML.src.load_dump)
G
g_train0 (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
generate_all_CNNs() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
generate_all_DNNs() (mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
generate_bc_values() (in module mechanoChemML.workflows.pde_solver.geometry)
generate_dummy_dataset() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
generate_poly_points() (in module mechanoChemML.workflows.pde_solver.geometry)
generatePolygon() (in module mechanoChemML.workflows.pde_solver.geometry)
Get1DGaussPointInfo() (in module mechanoChemML.src.pde_layers)
Get2DGaussPointInfo() (in module mechanoChemML.src.pde_layers)
Get2ndOrderIdentityTensor() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
get_bc_definition() (in module mechanoChemML.workflows.pde_solver.geometry)
get_cm() (in module mechanoChemML.workflows.pde_solver.pde_utility)
get_config() (mechanoChemML.src.transform_layer.Transform method)
get_current_fold_derivative_data() (mechanoChemML.src.kfold_train.MLKFold method)
get_dummy_data() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
get_next_fold() (mechanoChemML.src.kfold_train.MLKFold method)
get_next_model() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
get_now() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
get_package_version() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
get_pde_parameters() (mechanoChemML.src.nn_models.BNN_user_weak_pde_general_heter method)
GetElementInfo() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
GetElementResidualMask() (in module mechanoChemML.src.pde_layers)
GetEpsilon() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
GetF() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
GetFe() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
getlist_float() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(in module mechanoChemML.workflows.systemID.systemID)
getlist_int() (in module mechanoChemML.src.hparameters_cnn_grid)
(in module mechanoChemML.src.hparameters_dnn_grid)
(in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(in module mechanoChemML.workflows.systemID.systemID)
getlist_str() (in module mechanoChemML.src.hparameters_cnn_grid)
(in module mechanoChemML.src.hparameters_dnn_grid)
(in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(in module mechanoChemML.workflows.systemID.systemID)
GetNodalInfoFromElementInfo() (in module mechanoChemML.src.pde_layers)
global_sampling() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
groupsort() (in module mechanoChemML.src.texify)
H
hidden_layers (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
history (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
hyperparameter_search() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
HyperParametersCNN (class in mechanoChemML.src.hparameters_cnn_grid)
HyperParametersDNN (class in mechanoChemML.src.hparameters_dnn_grid)
hyperparameterSearch() (in module mechanoChemML.workflows.active_learning.hp_search)
I
i (in module mechanoChemML.workflows.active_learning.save_weights)
icombinations() (in module mechanoChemML.src.texify)
ideal() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
identifying() (mechanoChemML.workflows.systemID.systemID.systemID method)
IDNN (class in mechanoChemML.src.idnn)
idnn (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
(in module mechanoChemML.workflows.active_learning.optimize_hparameters)
(in module mechanoChemML.workflows.active_learning.save_weights)
IDNN_transforms() (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
(mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
importer() (in module mechanoChemML.src.load_dump)
inds (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
init_kfold() (mechanoChemML.src.kfold_train.MLKFold method)
initialize_arrays() (mechanoChemML.src.pde_layers.LayerBulkResidual method)
initialize_info() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
input_file (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
inputs (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
inspect_cnn_features() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
isnumber() (in module mechanoChemML.src.texify)
K
kappa (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
,
[1]
KBNN (class in mechanoChemML.src.kbnn)
kbnn_loss() (mechanoChemML.src.kbnn.KBNN method)
L
last (in module mechanoChemML.workflows.active_learning.save_weights)
LayerBulkResidual (class in mechanoChemML.src.pde_layers)
LayerDiffusionSteadyStateBulkResidual (class in mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state)
LayerFillRandomNumber (class in mechanoChemML.src.pde_layers)
LayerFillRandomToBCs (class in mechanoChemML.src.pde_layers)
LayerFillZeros (class in mechanoChemML.src.pde_layers)
LayerLinearElasticityBulkResidual (class in mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear)
LayerNonLinearElasticityBulkResidual (class in mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear)
learning_rate (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
load() (in module mechanoChemML.src.load_dump)
load_all_data() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_all_data_from_csv() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_all_data_from_npy_database() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_all_data_from_vtk_database() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_data_from_npy_for_label_shift_frame() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_data_from_vtk_database() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_data_from_vtk_for_label_shift_frame() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
load_one_model() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
load_saved_parameter_search() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
load_status() (mechanoChemML.src.kfold_train.MLKFold method)
load_trained_model() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
loadCASMOutput() (in module mechanoChemML.workflows.active_learning.data_generation_wrapper)
local_sampling() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
log (in module mechanoChemML.src.load_dump)
logger (in module mechanoChemML.src.load_dump)
M
main_workflow() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
mechanoChemML.src (module)
mechanoChemML.src.dictionary (module)
mechanoChemML.src.hparameters_cnn_grid (module)
mechanoChemML.src.hparameters_dnn_grid (module)
mechanoChemML.src.idnn (module)
mechanoChemML.src.kbnn (module)
mechanoChemML.src.kfold_train (module)
mechanoChemML.src.LeastR (module)
mechanoChemML.src.load_dump (module)
mechanoChemML.src.nn_models (module)
mechanoChemML.src.pde_layers (module)
mechanoChemML.src.stepwiseRegression (module)
mechanoChemML.src.texify (module)
mechanoChemML.src.transform_layer (module)
mechanoChemML.workflows (module)
mechanoChemML.workflows.active_learning (module)
mechanoChemML.workflows.active_learning.active_learning (module)
mechanoChemML.workflows.active_learning.data_generation_surrogate (module)
mechanoChemML.workflows.active_learning.data_generation_wrapper (module)
mechanoChemML.workflows.active_learning.hp_search (module)
mechanoChemML.workflows.active_learning.LSF_manager (module)
mechanoChemML.workflows.active_learning.optimize_hparameters (module)
mechanoChemML.workflows.active_learning.save_weights (module)
mechanoChemML.workflows.active_learning.slurm_manager (module)
mechanoChemML.workflows.mr_learning (module)
mechanoChemML.workflows.mr_learning.mrnn_models (module)
mechanoChemML.workflows.mr_learning.mrnn_utility (module)
mechanoChemML.workflows.pde_solver (module)
mechanoChemML.workflows.pde_solver.geometry (module)
mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state (module)
mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear (module)
mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear (module)
mechanoChemML.workflows.pde_solver.pde_utility (module)
mechanoChemML.workflows.pde_solver.pde_workflow_steady_state (module)
mechanoChemML.workflows.systemID (module)
mechanoChemML.workflows.systemID.forward_model (module)
mechanoChemML.workflows.systemID.generate_basis (module)
mechanoChemML.workflows.systemID.systemID (module)
merge_one_folder() (in module mechanoChemML.workflows.pde_solver.geometry)
merge_two_tensor() (in module mechanoChemML.src.nn_models)
MLKFold (class in mechanoChemML.src.kfold_train)
model (in module mechanoChemML.workflows.pde_solver.pde_workflow_steady_state)
mu (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
mu_train (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
multiple_fit_ridge() (in module mechanoChemML.src.LeastR)
my_mse_loss() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
my_mse_loss_with_grad() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
N
NN_user_general (class in mechanoChemML.src.nn_models)
norm() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
notebook_args() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
numCurrentJobs() (in module mechanoChemML.workflows.active_learning.LSF_manager)
(in module mechanoChemML.workflows.active_learning.slurm_manager)
O
on_epoch_end() (mechanoChemML.workflows.mr_learning.mrnn_models.callback_PrintDot method)
P
parse_sys_args() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(mechanoChemML.workflows.systemID.systemID.systemID method)
path_glob() (in module mechanoChemML.src.load_dump)
path_join() (in module mechanoChemML.src.load_dump)
path_split() (in module mechanoChemML.src.load_dump)
PDEWorkflowSteadyState (class in mechanoChemML.workflows.pde_solver.pde_workflow_steady_state)
phi (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
,
[1]
pickleable() (in module mechanoChemML.src.load_dump)
plot_all_folds() (mechanoChemML.src.kfold_train.MLKFold method)
plot_all_models() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
plot_best_models() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
plot_fields() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_lines() (in module mechanoChemML.workflows.pde_solver.geometry)
plot_one_field() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_one_field_hist() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_one_field_stat() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_one_loss() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_PDE_solutions() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_PDE_solutions_new() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_sigma2() (in module mechanoChemML.workflows.pde_solver.pde_utility)
plot_tex() (in module mechanoChemML.workflows.pde_solver.pde_utility)
pred (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
prepare_data_from_csv_file() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
prepare_kfold() (mechanoChemML.src.kfold_train.MLKFold method)
prepare_parameter_search() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
problem (in module mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state)
(in module mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear)
(in module mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear)
R
read (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
read_config() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
read_config_file() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(mechanoChemML.workflows.systemID.systemID.systemID method)
read_csv_fields() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
read_one_vtk() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
read_psi_me_from_mechanical_data() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
reduceOnPlateau (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
remove_extra_bc_pixel() (in module mechanoChemML.workflows.pde_solver.geometry)
remove_extra_bc_pixel_one_channel() (in module mechanoChemML.workflows.pde_solver.geometry)
results (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
rnd (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
(in module mechanoChemML.workflows.active_learning.save_weights)
run() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
S
save_current_parameter_search() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
save_status() (mechanoChemML.src.kfold_train.MLKFold method)
Schnakenberg_basis() (in module mechanoChemML.workflows.systemID.generate_basis)
Schnakenberg_model() (in module mechanoChemML.workflows.systemID.forward_model)
scinotation() (in module mechanoChemML.src.texify)
serialize() (in module mechanoChemML.src.load_dump)
set_i (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
setup() (in module mechanoChemML.src.load_dump)
setup_model() (mechanoChemML.workflows.systemID.systemID.systemID method)
shift_labels() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
size_of_data (in module mechanoChemML.src.kfold_train)
sorter() (in module mechanoChemML.src.load_dump)
special_input_case() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
split_data() (in module mechanoChemML.workflows.mr_learning.mrnn_utility)
(in module mechanoChemML.workflows.pde_solver.pde_utility)
split_data_heter() (in module mechanoChemML.workflows.pde_solver.pde_utility)
stepwise_regression() (mechanoChemML.workflows.systemID.systemID.systemID method)
stepwiseR (class in mechanoChemML.src.stepwiseRegression)
stepwiseR_fit() (mechanoChemML.src.stepwiseRegression.stepwiseR method)
stepwiseR_fit_aggressive() (mechanoChemML.src.stepwiseRegression.stepwiseR method)
stepwiseR_fit_most_insignificant() (mechanoChemML.src.stepwiseRegression.stepwiseR method)
submitCASM() (in module mechanoChemML.workflows.active_learning.data_generation_wrapper)
submitHPSearch() (in module mechanoChemML.workflows.active_learning.hp_search)
submitJob() (in module mechanoChemML.workflows.active_learning.LSF_manager)
(in module mechanoChemML.workflows.active_learning.slurm_manager)
surrogate_training() (mechanoChemML.workflows.active_learning.active_learning.Active_learning method)
sys_args (class in mechanoChemML.workflows.mr_learning.mrnn_utility)
systemID (class in mechanoChemML.workflows.systemID.systemID)
T
T (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
tensor_board_callback() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
test() (mechanoChemML.src.stepwiseRegression.stepwiseR method)
(mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
test_residual_gaussian() (mechanoChemML.workflows.pde_solver.pde_workflow_steady_state.PDEWorkflowSteadyState method)
Texify (class in mechanoChemML.src.texify)
texify() (mechanoChemML.src.texify.Texify method)
threeField_neo_Hookean_basis() (in module mechanoChemML.workflows.systemID.generate_basis)
threeField_neo_Hookean_model() (in module mechanoChemML.workflows.systemID.forward_model)
tot_img (in module mechanoChemML.workflows.pde_solver.pde_utility)
TOTAL_COUNT (in module mechanoChemML.workflows.pde_solver.geometry)
Transform (class in mechanoChemML.src.transform_layer)
transforms() (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
(in module mechanoChemML.workflows.active_learning.save_weights)
U
update_index_list() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
update_kfold_status() (mechanoChemML.src.kfold_train.MLKFold method)
update_model_info() (mechanoChemML.src.hparameters_cnn_grid.HyperParametersCNN method)
(mechanoChemML.src.hparameters_dnn_grid.HyperParametersDNN method)
update_neumann_bc_value() (in module mechanoChemML.workflows.pde_solver.geometry)
user_DNN_kregl1l2_gauss_grad (class in mechanoChemML.workflows.mr_learning.mrnn_models)
user_DNN_kregl1l2_gauss_grad_setup() (in module mechanoChemML.workflows.mr_learning.mrnn_models)
V
valid_loss (in module mechanoChemML.workflows.active_learning.optimize_hparameters)
vary_domain() (in module mechanoChemML.workflows.pde_solver.geometry)
W
w (in module mechanoChemML.workflows.active_learning.data_generation_surrogate)
(in module mechanoChemML.workflows.active_learning.save_weights)
waitForAll() (in module mechanoChemML.workflows.active_learning.LSF_manager)
(in module mechanoChemML.workflows.active_learning.slurm_manager)
WeakPDELinearElasticity (class in mechanoChemML.workflows.pde_solver.pde_system_elasticity_linear)
WeakPDENonLinearElasticity (class in mechanoChemML.workflows.pde_solver.pde_system_elasticity_nonlinear)
WeakPDESteadyStateDiffusion (class in mechanoChemML.workflows.pde_solver.pde_system_diffusion_steady_state)
weights (in module mechanoChemML.workflows.active_learning.save_weights)